Zpanel Installs

Pear - Install
wget http://pear.php.net/go-pear.phar
sudo php -d detect_unicode=0 go-pear.phar

If its blank with no output you need to
edit /etc/suhosin.ini
add suhosin.executor.include.whitelist = phar

When you install Pear install with the defaults
then in zpanel go to Admin, Module Admin, Apache Config
and change Use Open Base Dir to "FALSE"
edit /etc/php.ini
add include_path=".:/usr/share/pear:/php/includes"

Repo Browser - Install
zppy repo add rustus.txt-clan.com
zppy update
zppy install repo_browser

Vhosts edit for sub folder as main www dir
Admin, Module Admin, Apache Config
Select vhosts for the account you want and paste the whole lot for document root in there
so example would be

DocumentRoot "/var/zpanel/hostdata/MYHOSTNAME/public_html/MYHOST.COM"

and you would change to

DocumentRoot "/var/zpanel/hostdata/MYHOSTNAME/public_html/MYHOST.COM/subfolder/anothersubfolder"

Backup database's but not files
Admin, Module Admin, Backup Config

Ajax Explorer addon

in /etc/zpanel/panel/etc/apps/ajaxplorer/conf
and file bootstrap_conf.php
uncomment line with define("AJXP_LOCALE", "en_EN.UTF-8");